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Travis Wheeler

Associate Professor, Genetics - GIDP | Member of the Graduate Faculty | Associate Professor | Associate Professor, Applied Mathematics - GIDP

Pharmacy Practice and Science

Collaboration(19)

Teshia Solomon
Tyson Swetnam
Francisco Moreno
Jason Karnes
Marc Verhougstraete

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Grants(12)

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Publications(17)

Recent

Sensitive and error-tolerant annotation of protein-coding DNA with BATH

2024

genomics, bioinformatics, molecular biology, computational biology, annotation

NEAR: Neural Embeddings for Amino acid Relationships

2024

neural networks, bioinformatics, amino acids, protein modeling, machine learning

nail: software for high-speed, high-sensitivity protein sequence annotation

2024

bioinformatics, protein sequencing, computational biology, software development, data analysis

A community effort in SARS-CoV-2 drug discovery

2023

drug discovery, sars-cov-2, community effort, viral research, collaborative research

Framework of the Alu Subfamily Evolution in the platyrrhine Three-Family Clade of Cebidae, Callithrichidae, and Aotidae

2023

genomic evolution, primate genetics, alu elements, evolutionary biology, phylogenetics

DISCO: A deelearning ensemble for uncertainty-aware segmentation of acoustic signals

2023

deep learning, acoustic signals, segmentation, uncertainty-aware, ensemble learning

An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models

2023

fpga-based hardware, accelerator, sequence homology, profile hidden markov models, filtering

GraffiTE: a Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Genome-graphs

2023

transposable elements, genome-graphs, polymorphisms, genomic analysis, bioinformatics

VIBES: A Workflow for Annotating and Visualizing Viral Sequences Integrated into Bacterial Genomes

2023

bioinformatics, genomics, viral ecology, data visualization, microbiology

WAS IT A MATch I SAW? Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences

2023

bioinformatics, genomics, sequence analysis, pattern matching, data benchmarking